Alignment-free classification of COI DNA barcode data with the Python package Alfie
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چکیده
منابع مشابه
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15 صفحه اولComparing COI and ITS as DNA Barcode Markers for Mushrooms and Allies (Agaricomycotina)
DNA barcoding is an approach to rapidly identify species using short, standard genetic markers. The mitochondrial cytochrome oxidase I gene (COI) has been proposed as the universal barcode locus, but its utility for barcoding in mushrooms (ca. 20,000 species) has not been established. We succeeded in generating 167 partial COI sequences (~450 bp) representing ~100 morphospecies from ~650 collec...
متن کاملCongruence between cytochrome oxidase I (COI) and morphological data in Anuraphis spp. (Hemiptera, Aphididae) with a comparison between the utility of the 5’ barcode and 3’ COI regions
The discrimination of species in the genus Anuraphis is particularly difficult due to the overlap of morphological characters. In this study, we used the 5' (barcode) and 3' regions of cytochrome oxidase I (COI) to test their utility in the identification of species in this genus as well as closely related species. Both regions were useful to discriminate all the species tested. However the non...
متن کاملThe DNA Barcode Linker.
DNA barcoding is based on the use of short DNA sequences to provide taxonomic tags for rapid, efficient identification of biological specimens. Currently, reference databases are being compiled. In the future, it will be important to facilitate access to these databases, especially for nonspecialist users. The method described here provides a rapid, web-based, user-friendly link between the DNA...
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ژورنال
عنوان ژورنال: Metabarcoding and Metagenomics
سال: 2020
ISSN: 2534-9708
DOI: 10.3897/mbmg.4.55815